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SEQMAN NGEN

Accurately assemble and align genomic sequencing data without manual intervention.

Home > DNASTAR Bioinformatics Software > DNASTAR Lasergene > SeqMan NGen

SeqMan NGen

In the ever-expanding field of genomic sequence assembly software, Lasergene Genomics stands alone, in part due to SeqMan NGen — our revolutionary assembler that enables you to set up your entire genomic sequencing project in mere minutes. SeqMan NGen automates tasks that typically require extensive manual intervention, including automatically organizing replicates, built-in access to diverse genome template packages, automatic incorporation of BED and VCF files, and automatic detection, annotation, and analysis of variants.

Our patented algorithms enable you to assemble and align resequencing data, transcriptomic data, and de novo genomic sequencing data with unsurpassed ease and speed. Should your project require more computing power, SeqMan NGen provides integrated access to DNASTAR Cloud Assemblies, so that you can utilize our cloud computing resources and free up your local computer to do other things.

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Learn more about SeqMan NGen

Workflows   | Resources   | FAQs   | Compare Packages

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SeqMan NGen Workflows

Clinical Research

De Novo Genome Assembly

Metagenomic Assembly

Variant Analysis

Viral Genome Analysis

Whole Genome/Exome Sequencing

ChIP-Seq Data Assembly

De Novo Transcriptome Assembly

RNA-Seq Alignment

Resources

Please see our resources below for more information on SeqMan NGen genome assembly software.

7 Steps for Human Variant Analysis

Download eBook

Choosing the Best Assembly Strategy for Your Genomic Sequencing Data

Watch Webinar

Answers to Your “Genomic Data Assembly Strategies” Webinar Questions

Read Blog Post

RNA-Seq Assembly and Normalization Methods—an Interview with Dr. Carl-Erik Tornqvist

Read Blog Post

De novo Transcriptome Assembly: SeqMan NGen vs. CLC Genomics Workbench

Read Blog Post

RNA-Seq Analysis using Lasergene Genomics

Watch Webinar

How to Assemble Genomes like a Bioinformatics Pro

Read Blog Post

Genome Polishing Benchmarks: SeqMan NGen vs. Three Open-Source Tools

Read Blog Post

Working with Variant Call Format Files in Lasergene Genomics

Read Blog Post

SeqMan NGen Help

User Guide

SeqMan NGen Tutorials

Tutorials

  • Easy and fast

    “It is easy and fast to identify SNPs, structural changes, and CNVs.”

    Kirk Nelson, Qpex Biopharma Inc.

  • Recommended it highly

    “I have never experienced a problem with this easy to use package…I recommended it highly.”

    Dr. Andrew M. Kropinski, University of Guelph

  • Easy and fast

    “It is easy and fast to identify SNPs, structural changes, and CNVs.”

    Kirk Nelson, Qpex Biopharma Inc.

  • Elevated my research

    “SeqMan NGen has elevated my research to a new level by allowing us to do both reference-based and de novo transcriptome analysis.”

    Dr. Math Cuajungco, California State University Fullerton

FAQs

Which Lasergene package includes SeqMan NGen?

SeqMan NGen is part of the Lasergene Genomics package, which includes all the applications you need for our genomics and transcriptomics workflows.

SeqMan NGen is also included as part of Lasergene Molecular Biology for Sanger sequence assemblies only.

Finally, SeqMan NGen is included in the complete DNASTAR Lasergene package which includes all of the applications and supported workflows from Lasergene Molecular Biology, Lasergene Protein, and Lasergene Genomics.

What types of read technology does SeqMan NGen support?

SeqMan NGen supports Illumina, Oxford Nanopore, PacBio, 454, Sanger/ABI and Ion Torrent sequencing technologies. For a full list of supported file types, see our File Formats resource.

Can I analyze my NGS data in SeqMan NGen?

SeqMan NGen is part of Lasergene Genomics, our comprehensive software package that provides everything you need for NGS and long read sequencing assembly, alignment, and analysis. SeqMan NGen performs the project set up and assembly. Post-assembly analysis is performed in other applications within Lasergene Genomics: SeqMan Ultra, ArrayStar, and GenVision Pro.

How long does it take to assemble and call variants in SeqMan NGen?

This depends whether you are doing the assembly on your local computer or are using DNASTAR Cloud Assembly. Depending on hardware and depth of sequences, local whole-genome resequencing can take as little as 5 minutes for a bacterial assembly to 24+ hours for a mammalian genome. A typical whole exome sequencing assembly takes between 30 and 90 minutes. Regardless of workflow, cloud assemblies are much faster and multiple assemblies can also be run simultaneously.

Compare DNASTAR Lasergene Packages

  MOST POPULARDNASTAR Lasergene
Lasergene Molecular Biology Lasergene Genomics Lasergene Protein
Included Applications
SeqBuilder Pro
SeqMan Ultra
MegAlign Pro
GeneQuest
GenVision
SeqNinja
SeqMan NGen
ArrayStar
GenVision Pro
Protean 3D
(+1 prediction per Nova Application)
DNASTAR Navigator
Supported Workflows
Antibody Phage Display
Automated Virtual Cloning
Clone Sequence Verification
Gel Electrophoresis Simulation
Mauve Genome Alignment
Multiple Sequence Alignment
Pairwise Sequence Alignment
PCR Primer Design
PCR Site-Directed Mutagenesis
Phylogenetic Analysis
Plasmid Maps
Sequence Editing and Annotation
Sanger Sequence Assembly
ChIP-Seq Data Analysis
Clinical Research
De Novo Transcriptome Assembly
Large Scale Variant Analysis
Metagenomic Assembly
NGS De Novo Genome Assembly
RNA-Seq Alignment
Viral Genome Analysis
Whole Exome/Genome Sequencing
Antibody Modeling
Epitope Prediction
Protein Docking
Protein Sequence Analysis
Protein Stability Prediction
Protein Structural Alignment
Protein Structure Analysis
Protein Structure Prediction
Integrates with
DNASTAR Cloud Data Drive
DNASTAR Cloud Assemblies  
NovaDock
NovaFold
NovaFold Antibody
Pricing
Annual pricing starting at:

$599/year
See Pricing

$1,499/year
See Pricing

$799/year
See Pricing

$2,399/year
See Pricing
   

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